Single miRNA

Lsa-MIR157c

Basic info.

miRNA locus ID
Lsa-MIR157c

miRNA locus accession
PmiREN000000007

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_4 307183956 307184084 +

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     G       --AC     T         -                  GC   AA    ACAA
AGAGA GGGAATG    GGATG TGACAGAAG ATAGAGAGCACAAAGAGG  ATG  GTGA    
||||| |||||||    ||||| ||||||||| ||||||||||||||||||  |||  ||||    A
TCTCT TTCTTAT    CCTAT ACTGTCTTC TATTTCTCGTGTTTCTTC  TAC  CATT    
     G       AAAT     T         A                  AC   -A    ATAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID: 6
Chromosome: Lsat_1_v8_lg_4
Cluster start: 307183956
Cluster end: 307184818

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Lsa-miR157c , Lsa-miR157d , Lsa-miR157e	PmiREN000000007, PmiREN000000008, PmiREN000000009	Lsat_1_v8_lg_4	+	307183956	307184818

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_45201.1	NA	4	NA
Lsat_1_v5_gn_1_128400.1	2	3	NA
Lsat_1_v5_gn_1_14560.1	NA	4	NA
Lsat_1_v5_gn_1_53840.1	3	NA	NA
Lsat_1_v5_gn_2_134361.1	3	4	NA
Lsat_1_v5_gn_2_60101.1	3	4	NA
Lsat_1_v5_gn_2_89461.1	3	NA	NA
Lsat_1_v5_gn_2_91500.1	NA	4	NA
Lsat_1_v5_gn_3_31000.1	1.5	1	NA
Lsat_1_v5_gn_3_35341.1	NA	4	NA
Lsat_1_v5_gn_3_91700.1	3	NA	NA
Lsat_1_v5_gn_4_113241.1	NA	3	NA
Lsat_1_v5_gn_4_1141.1	2.5	2	NA
Lsat_1_v5_gn_4_184960.1	1.5	1	NA
Lsat_1_v5_gn_4_33541.1	NA	NA	2
Lsat_1_v5_gn_4_421.1	1.5	NA	NA
Lsat_1_v5_gn_4_59441.1	NA	4	NA
Lsat_1_v5_gn_4_69920.1	NA	4	NA
Lsat_1_v5_gn_4_81541.1	NA	4	NA
Lsat_1_v5_gn_4_89360.1	3	NA	NA
Lsat_1_v5_gn_5_104601.1	NA	NA	2
Lsat_1_v5_gn_5_111980.1	3	NA	NA
Lsat_1_v5_gn_5_12360.1	2.5	NA	NA
Lsat_1_v5_gn_5_133880.1	NA	4	NA
Lsat_1_v5_gn_5_142161.1	NA	NA	2
Lsat_1_v5_gn_5_1501.1	3	NA	NA
Lsat_1_v5_gn_5_94140.1	3	NA	NA
Lsat_1_v5_gn_5_94240.1	2.5	3	NA
Lsat_1_v5_gn_7_11040.1	2.5	2	2
Lsat_1_v5_gn_7_115861.1	3	NA	NA
Lsat_1_v5_gn_7_33421.1	2.5	NA	NA
Lsat_1_v5_gn_7_50561.1	3	4	NA
Lsat_1_v5_gn_8_134061.1	NA	4	NA
Lsat_1_v5_gn_8_134640.1	2.5	2	NA
Lsat_1_v5_gn_8_23360.1	3	NA	NA
Lsat_1_v5_gn_8_32740.1	3	NA	NA
Lsat_1_v5_gn_8_32760.1	3	NA	NA
Lsat_1_v5_gn_9_28021.1	1.5	1	NA
Lsat_1_v5_gn_9_50520.1	NA	4	NA