Single miRNA

Lsa-MIRN1652a

Basic info.

miRNA locus ID
Lsa-MIRN1652a

miRNA locus accession
PmiREN000000144

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_9 31857526 31857652 +

Comments
A member of family MIRN1652

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   ACTATCCAAT   A   T   CG    T            G       -T    ---      TT
             CGA GTG CAT  CCTC AAAACTTAAGAA ACGTTGT  TTCA   GACGGC  
             ||| ||| |||  |||| |||||||||||| |||||||  ||||   ||||||   
             GCT CAT GTA  GGAG TTTTGAATTCTT TGCAACA  GGGT   TTGCTG  
GTTAATAGTAGTT   -   T   -A    -            G       TT    TTT      CC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID: 9
Chromosome: Lsat_1_v8_lg_9
Cluster start: 31850443
Cluster end: 31842499

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Lsa-miRN1690 , Lsa-miRN1687 , Lsa-miRN1652a , Lsa-miRN1652b	PmiREN000000133, PmiREN000000169, PmiREN000000144, PmiREN000000171	Lsat_1_v8_lg_9	-	31850443	31842499

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_20660.1	NA	NA	2
Lsat_1_v5_gn_0_39101.1	2.5	NA	NA
Lsat_1_v5_gn_0_41301.1	2.5	NA	NA
Lsat_1_v5_gn_0_43840.1	1.5	NA	NA
Lsat_1_v5_gn_1_102000.1	2	NA	NA
Lsat_1_v5_gn_1_102200.1	1.5	NA	0
Lsat_1_v5_gn_1_102280.1	1.5	NA	0
Lsat_1_v5_gn_1_105241.1	2.5	NA	NA
Lsat_1_v5_gn_1_34841.1	NA	NA	2
Lsat_1_v5_gn_1_77280.1	2.5	4	0
Lsat_1_v5_gn_1_77600.1	3	4	0
Lsat_1_v5_gn_1_78021.1	3	NA	NA
Lsat_1_v5_gn_1_78540.1	3	NA	0
Lsat_1_v5_gn_1_79100.1	3	NA	NA
Lsat_1_v5_gn_1_80200.1	NA	NA	0
Lsat_1_v5_gn_1_86101.1	2.5	NA	NA
Lsat_1_v5_gn_1_91840.1	2	NA	0
Lsat_1_v5_gn_1_91860.1	2	NA	2
Lsat_1_v5_gn_1_91880.1	2	NA	2
Lsat_1_v5_gn_1_91940.1	2	NA	2
Lsat_1_v5_gn_1_92080.1	2	NA	NA
Lsat_1_v5_gn_1_92100.1	2	NA	NA
Lsat_1_v5_gn_1_93520.1	2	4	2
Lsat_1_v5_gn_1_93600.1	2	NA	2
Lsat_1_v5_gn_1_93640.1	2	NA	NA
Lsat_1_v5_gn_1_93741.1	2	NA	NA
Lsat_1_v5_gn_1_94001.1	2	NA	NA
Lsat_1_v5_gn_1_94121.1	2	NA	2
Lsat_1_v5_gn_1_94261.1	2	4	0
Lsat_1_v5_gn_1_94401.1	2	4	0
Lsat_1_v5_gn_1_94481.1	2	NA	0
Lsat_1_v5_gn_1_94641.1	2	4	0
Lsat_1_v5_gn_1_95000.1	2	NA	0
Lsat_1_v5_gn_2_11741.1	3	NA	NA
Lsat_1_v5_gn_2_13121.1	2.5	NA	1
Lsat_1_v5_gn_2_13161.1	2.5	NA	0
Lsat_1_v5_gn_2_13281.1	3	NA	NA
Lsat_1_v5_gn_2_14340.1	2.5	NA	0
Lsat_1_v5_gn_2_14460.1	3	NA	NA
Lsat_1_v5_gn_2_15941.1	3	NA	0
Lsat_1_v5_gn_2_31321.1	2.5	NA	0
Lsat_1_v5_gn_2_4940.1	3	NA	NA
Lsat_1_v5_gn_2_5001.1	2.5	NA	NA
Lsat_1_v5_gn_2_60401.1	2	NA	2
Lsat_1_v5_gn_3_124900.1	3	NA	NA
Lsat_1_v5_gn_3_137320.1	NA	NA	2
Lsat_1_v5_gn_4_111140.1	2.5	NA	NA
Lsat_1_v5_gn_4_144921.1	2.5	NA	NA
Lsat_1_v5_gn_4_147480.1	3	NA	NA
Lsat_1_v5_gn_4_148200.1	3	NA	NA
Lsat_1_v5_gn_4_148421.1	3	NA	NA
Lsat_1_v5_gn_4_150441.1	1.5	NA	NA
Lsat_1_v5_gn_4_150461.1	1.5	NA	NA
Lsat_1_v5_gn_4_150481.1	1.5	NA	NA
Lsat_1_v5_gn_4_150561.1	3	NA	NA
Lsat_1_v5_gn_4_150641.1	1.5	NA	NA
Lsat_1_v5_gn_4_150681.1	3	NA	NA
Lsat_1_v5_gn_4_170421.1	NA	4	NA
Lsat_1_v5_gn_4_170461.1	NA	4	NA
Lsat_1_v5_gn_4_37901.1	3	NA	NA
Lsat_1_v5_gn_4_37921.1	2.5	NA	NA
Lsat_1_v5_gn_4_55321.1	NA	NA	2
Lsat_1_v5_gn_4_82620.1	NA	4	NA
Lsat_1_v5_gn_5_101660.1	2	NA	0
Lsat_1_v5_gn_5_103361.1	3	NA	NA
Lsat_1_v5_gn_5_159861.1	2.5	4	NA
Lsat_1_v5_gn_5_188940.1	NA	4	NA
Lsat_1_v5_gn_5_39440.1	1.5	NA	NA
Lsat_1_v5_gn_5_39460.1	1.5	NA	NA
Lsat_1_v5_gn_5_39581.1	1.5	NA	NA
Lsat_1_v5_gn_5_78281.1	2.5	NA	0
Lsat_1_v5_gn_6_107860.1	NA	NA	2
Lsat_1_v5_gn_6_74641.1	0.5	NA	0
Lsat_1_v5_gn_7_35540.1	1.5	NA	0
Lsat_1_v5_gn_7_39041.1	NA	NA	2
Lsat_1_v5_gn_7_44820.1	2.5	4	NA
Lsat_1_v5_gn_7_44940.1	2.5	NA	NA
Lsat_1_v5_gn_7_46620.1	3	NA	NA
Lsat_1_v5_gn_7_46640.1	2.5	NA	2
Lsat_1_v5_gn_7_46720.1	2.5	NA	NA
Lsat_1_v5_gn_7_48041.1	3	NA	0
Lsat_1_v5_gn_7_48060.1	3	NA	0
Lsat_1_v5_gn_7_48101.1	3	NA	0
Lsat_1_v5_gn_7_48140.1	3	NA	0
Lsat_1_v5_gn_7_48161.1	2.5	NA	NA
Lsat_1_v5_gn_7_48220.1	1	NA	2
Lsat_1_v5_gn_7_66420.1	3	NA	0
Lsat_1_v5_gn_8_12740.1	NA	NA	2
Lsat_1_v5_gn_8_127960.1	NA	NA	2
Lsat_1_v5_gn_8_155520.1	2.5	NA	NA
Lsat_1_v5_gn_8_2021.1	2.5	NA	NA
Lsat_1_v5_gn_8_48760.1	NA	NA	0
Lsat_1_v5_gn_8_51501.1	2.5	NA	NA
Lsat_1_v5_gn_9_123641.1	2	NA	0
Lsat_1_v5_gn_9_14781.1	2.5	NA	0
Lsat_1_v5_gn_9_58521.1	NA	NA	0
Lsat_1_v5_gn_9_61900.1	2.5	NA	0
Lsat_1_v5_gn_9_89781.1	3	NA	NA
Lsat_1_v5_gn_9_90700.1	1	NA	2
Lsat_1_v5_gn_9_91361.1	3	NA	0
Lsat_1_v5_gn_9_91561.1	NA	4	NA
Lsat_1_v5_gn_9_91880.1	1.5	NA	NA
Lsat_1_v5_gn_9_91940.1	1.5	NA	NA
Lsat_1_v5_gn_9_92681.1	2.5	NA	2
Lsat_1_v5_gn_9_92720.1	3	NA	NA
Lsat_1_v5_gn_9_92740.1	1.5	NA	NA
Lsat_1_v5_gn_9_92980.1	1.5	NA	NA
Lsat_1_v5_gn_9_93340.1	1.5	NA	NA