Single miRNA

Lsa-MIR395d

Basic info.

miRNA locus ID
Lsa-MIR395d

miRNA locus accession
precursor000298

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_4 38428222 38428413 -

Comments
A member of family MIR395

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CCUCUCUCUUUAUAUAUACCAAGTAATTC  --  A  --   ATTTTCAAAACAAAGCAATCAACTTCAACCAAATACAGATGAAGGAAAAGCCAAGTTTTCCTCA
                             TG  GC TG  TTT                                                                
                             ||  || ||  |||                                                                G
                             CA  GG GA  CTC                                                                
                   AACCACAGTG  TC  -  AC   AAGGGGGTTTGTGAAGTCATCTTTTAGTAATTATTTCGTAGGGTTACATCACAAGCCTCCTAGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID: 2
Chromosome: Lsat_1_v8_lg_4
Cluster start: 38411732
Cluster end: 38428413

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Lsa-miR395a , Lsa-miR395b , Lsa-miR395c , Lsa-miR395d	precursor000295, precursor000296, precursor000297, precursor000298	Lsat_1_v8_lg_4	-	38411732	38428413

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_54360.1	NA	4	NA
Lsat_1_v5_gn_1_66741.1	2.5	NA	NA
Lsat_1_v5_gn_2_6321.1	NA	4	NA
Lsat_1_v5_gn_4_38461.1	NA	4	NA
Lsat_1_v5_gn_4_40881.1	3	NA	NA
Lsat_1_v5_gn_5_146820.1	3	4	NA
Lsat_1_v5_gn_6_44060.1	3	NA	NA
Lsat_1_v5_gn_6_45421.1	NA	4	NA
Lsat_1_v5_gn_6_46681.1	NA	3	NA
Lsat_1_v5_gn_8_103380.1	NA	4	NA
Lsat_1_v5_gn_8_13521.1	2.5	NA	NA
Lsat_1_v5_gn_8_68740.1	NA	NA	2
Lsat_1_v5_gn_8_96780.1	3	4	NA
Lsat_1_v5_gn_9_124380.1	NA	4	NA
Lsat_1_v5_gn_9_44640.1	1.5	NA	NA