Single miRNA

Lsa-MIRN518

Basic info.

miRNA locus ID
Lsa-MIRN518

miRNA locus accession
PmiREN000000116

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 51937067 51937192 +

Comments
A member of family MIRN518

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     -     TTGTT    C   A       A                   TT     ---    TG
  ATG ATACC     AATA TAT CCAAAGG GTATACATCGGATTTTTTG  GATAT   TCTT  
  ||| |||||     |||| ||| ||||||| |||||||||||||||||||  |||||   ||||   
  TAC TATGG     TTAT ATA GGTTTCC CATATGTGGCTTAAGAAAC  CTATA   AGAA  
TA   A     -TTGT    A   C       -                   --     TTA    CT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID: 7
Chromosome: Lsat_1_v8_lg_5
Cluster start: 0
Cluster end: 51937192

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Lsa-MIRN7094 , Lsa-miRN518	PmiREN000000160, PmiREN000000116	Lsat_1_v8_lg_5	+	0	51937192

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_29680.1	2.5	NA	NA
Lsat_1_v5_gn_1_104440.1	NA	NA	0
Lsat_1_v5_gn_1_22141.1	NA	NA	0
Lsat_1_v5_gn_1_36260.1	2.5	NA	0
Lsat_1_v5_gn_1_41201.1	NA	NA	2
Lsat_1_v5_gn_1_45420.1	NA	4	2
Lsat_1_v5_gn_1_45540.1	NA	4	NA
Lsat_1_v5_gn_1_45560.1	NA	4	NA
Lsat_1_v5_gn_1_53901.1	NA	NA	2
Lsat_1_v5_gn_1_76480.1	3	NA	NA
Lsat_1_v5_gn_1_86101.1	2.5	NA	0
Lsat_1_v5_gn_1_86480.1	3	NA	NA
Lsat_1_v5_gn_1_86641.1	2.5	NA	NA
Lsat_1_v5_gn_1_86860.1	3	NA	NA
Lsat_1_v5_gn_1_90341.1	2.5	NA	0
Lsat_1_v5_gn_2_119420.1	2	4	NA
Lsat_1_v5_gn_2_119480.1	NA	NA	2
Lsat_1_v5_gn_2_122641.1	NA	NA	2
Lsat_1_v5_gn_2_29880.1	NA	NA	2
Lsat_1_v5_gn_2_57821.1	2.5	NA	NA
Lsat_1_v5_gn_3_103240.1	3	NA	NA
Lsat_1_v5_gn_3_62261.1	NA	NA	1
Lsat_1_v5_gn_3_85401.1	NA	NA	2
Lsat_1_v5_gn_4_110861.1	2	NA	0
Lsat_1_v5_gn_4_162541.1	3	NA	0
Lsat_1_v5_gn_4_162681.1	3	NA	0
Lsat_1_v5_gn_4_173121.1	NA	NA	0
Lsat_1_v5_gn_4_173140.1	NA	NA	2
Lsat_1_v5_gn_4_173760.1	NA	NA	0
Lsat_1_v5_gn_4_34681.1	3	NA	NA
Lsat_1_v5_gn_5_164080.1	3	NA	NA
Lsat_1_v5_gn_5_42501.1	3	NA	NA
Lsat_1_v5_gn_5_42521.1	2.5	NA	NA
Lsat_1_v5_gn_5_48961.1	NA	4	NA
Lsat_1_v5_gn_5_54000.1	3	NA	0
Lsat_1_v5_gn_5_54160.1	2	4	0
Lsat_1_v5_gn_5_54180.1	2.5	NA	NA
Lsat_1_v5_gn_5_54260.1	2.5	4	1
Lsat_1_v5_gn_5_54441.1	1.5	2	2
Lsat_1_v5_gn_5_54481.1	2	4	NA
Lsat_1_v5_gn_5_54521.1	2	4	0
Lsat_1_v5_gn_5_54880.1	2	4	0
Lsat_1_v5_gn_5_55040.1	2.5	NA	NA
Lsat_1_v5_gn_5_56320.1	3	NA	NA
Lsat_1_v5_gn_5_57100.1	2	NA	2
Lsat_1_v5_gn_5_58120.1	2	NA	NA
Lsat_1_v5_gn_5_58161.1	1.5	NA	0
Lsat_1_v5_gn_5_61420.1	2	NA	0
Lsat_1_v5_gn_5_61960.1	3	NA	NA
Lsat_1_v5_gn_5_62501.1	2	NA	NA
Lsat_1_v5_gn_5_62981.1	NA	3	NA
Lsat_1_v5_gn_5_63740.1	NA	NA	2
Lsat_1_v5_gn_5_63761.1	2.5	NA	2
Lsat_1_v5_gn_5_76060.1	NA	4	NA
Lsat_1_v5_gn_5_76080.1	NA	4	NA
Lsat_1_v5_gn_5_80540.1	NA	4	1
Lsat_1_v5_gn_5_80580.1	NA	4	0
Lsat_1_v5_gn_5_80600.1	NA	NA	0
Lsat_1_v5_gn_6_17600.1	2.5	NA	2
Lsat_1_v5_gn_6_74581.1	3	4	2
Lsat_1_v5_gn_6_74680.1	1	4	NA
Lsat_1_v5_gn_6_74900.1	2.5	NA	NA
Lsat_1_v5_gn_6_75300.1	3	NA	NA
Lsat_1_v5_gn_6_75361.1	1.5	4	NA
Lsat_1_v5_gn_6_78280.1	NA	4	NA
Lsat_1_v5_gn_7_30821.1	3	NA	NA
Lsat_1_v5_gn_7_38221.1	2.5	NA	NA
Lsat_1_v5_gn_7_43660.1	NA	NA	2
Lsat_1_v5_gn_7_44381.1	3	NA	NA
Lsat_1_v5_gn_7_49881.1	NA	NA	2
Lsat_1_v5_gn_7_62580.1	NA	NA	0
Lsat_1_v5_gn_7_62820.1	NA	4	2
Lsat_1_v5_gn_7_62960.1	2.5	NA	0
Lsat_1_v5_gn_7_63440.1	NA	4	NA
Lsat_1_v5_gn_7_66640.1	NA	NA	2
Lsat_1_v5_gn_8_110421.1	2.5	NA	2
Lsat_1_v5_gn_8_2701.1	NA	NA	0
Lsat_1_v5_gn_8_47041.1	NA	NA	0
Lsat_1_v5_gn_8_47061.1	NA	NA	0
Lsat_1_v5_gn_8_48940.1	NA	4	0
Lsat_1_v5_gn_8_75500.1	NA	NA	2
Lsat_1_v5_gn_9_107881.1	NA	NA	2
Lsat_1_v5_gn_9_112541.1	3	NA	NA
Lsat_1_v5_gn_9_120080.1	3	NA	NA
Lsat_1_v5_gn_9_120221.1	2	NA	0
Lsat_1_v5_gn_9_122720.1	3	NA	NA
Lsat_1_v5_gn_9_125121.1	NA	NA	1
Lsat_1_v5_gn_9_12880.1	NA	NA	1
Lsat_1_v5_gn_9_25601.1	NA	NA	2
Lsat_1_v5_gn_9_86300.1	NA	NA	2
Lsat_1_v5_gn_9_95821.1	NA	NA	2