Single miRNA

Lsa-MIRN7094

Basic info.

miRNA locus ID
Lsa-MIRN7094

miRNA locus accession
PmiREN000000160

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 51931331 51931458 +

Comments
A member of family MIRN7094

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTACACGATA       T              T         TGTT      AT       TT
            CTACAAT AATGAGTAGACATC GATTCTTTT    AGATGT  ATCTTCA  
            ||||||| |||||||||||||| |||||||||    ||||||  |||||||   
            GGTGTTG TTGCTTATCTGTAG CTAAGAGAA    TTTACA  TAGAAGT  
TGTGTATATATG       T              T         TATT      GT       AT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID: 7
Chromosome: Lsat_1_v8_lg_5
Cluster start: 0
Cluster end: 51937192

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Lsa-MIRN7094 , Lsa-miRN518	PmiREN000000160, PmiREN000000116	Lsat_1_v8_lg_5	+	0	51937192

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_21600.1	2.5	NA	NA
Lsat_1_v5_gn_0_26101.1	NA	3	NA
Lsat_1_v5_gn_0_37340.1	1.5	NA	0
Lsat_1_v5_gn_0_41321.1	NA	NA	2
Lsat_1_v5_gn_1_100380.1	NA	NA	2
Lsat_1_v5_gn_1_104440.1	2.5	NA	NA
Lsat_1_v5_gn_1_105021.1	3	4	NA
Lsat_1_v5_gn_1_117861.1	1	NA	NA
Lsat_1_v5_gn_1_19921.1	NA	4	NA
Lsat_1_v5_gn_1_32101.1	NA	NA	2
Lsat_1_v5_gn_1_45420.1	3	3	NA
Lsat_1_v5_gn_1_45540.1	3	3	NA
Lsat_1_v5_gn_1_45560.1	3	3	NA
Lsat_1_v5_gn_1_49141.1	2.5	4	NA
Lsat_1_v5_gn_1_49660.1	NA	4	NA
Lsat_1_v5_gn_1_82220.1	NA	4	0
Lsat_1_v5_gn_1_85181.1	3	NA	NA
Lsat_1_v5_gn_1_86001.1	0	NA	NA
Lsat_1_v5_gn_1_86061.1	1.5	2	NA
Lsat_1_v5_gn_1_86381.1	2.5	3	NA
Lsat_1_v5_gn_1_86441.1	1.5	2	NA
Lsat_1_v5_gn_1_86480.1	1	1	2
Lsat_1_v5_gn_1_86641.1	1.5	2	NA
Lsat_1_v5_gn_1_87640.1	2.5	3	NA
Lsat_1_v5_gn_1_88221.1	1.5	3	2
Lsat_1_v5_gn_1_88361.1	2	NA	NA
Lsat_1_v5_gn_1_88381.1	2	NA	NA
Lsat_1_v5_gn_1_88661.1	2.5	3	NA
Lsat_1_v5_gn_1_89060.1	2.5	NA	NA
Lsat_1_v5_gn_1_89180.1	2	NA	NA
Lsat_1_v5_gn_1_89461.1	1.5	NA	2
Lsat_1_v5_gn_1_89581.1	NA	4	NA
Lsat_1_v5_gn_1_90341.1	NA	NA	2
Lsat_1_v5_gn_1_90561.1	1.5	2	NA
Lsat_1_v5_gn_1_9061.1	NA	4	2
Lsat_1_v5_gn_1_90981.1	2.5	NA	NA
Lsat_1_v5_gn_1_92401.1	3	NA	NA
Lsat_1_v5_gn_2_117520.1	3	NA	NA
Lsat_1_v5_gn_2_119420.1	NA	4	NA
Lsat_1_v5_gn_2_13421.1	3	4	NA
Lsat_1_v5_gn_2_134361.1	2.5	4	2
Lsat_1_v5_gn_2_29880.1	3	NA	NA
Lsat_1_v5_gn_2_51941.1	NA	4	NA
Lsat_1_v5_gn_2_57021.1	1.5	2	NA
Lsat_1_v5_gn_2_57821.1	NA	4	NA
Lsat_1_v5_gn_2_57901.1	2	NA	NA
Lsat_1_v5_gn_2_64621.1	NA	4	NA
Lsat_1_v5_gn_2_87400.1	NA	4	NA
Lsat_1_v5_gn_3_108740.1	3	4	NA
Lsat_1_v5_gn_3_113540.1	3	NA	NA
Lsat_1_v5_gn_3_126721.1	NA	NA	2
Lsat_1_v5_gn_3_59680.1	NA	NA	2
Lsat_1_v5_gn_3_76620.1	NA	NA	2
Lsat_1_v5_gn_3_95200.1	2	2	NA
Lsat_1_v5_gn_4_110861.1	2.5	2	NA
Lsat_1_v5_gn_4_127841.1	3	NA	2
Lsat_1_v5_gn_4_138740.1	3	NA	NA
Lsat_1_v5_gn_4_152881.1	NA	NA	2
Lsat_1_v5_gn_4_155100.1	NA	4	NA
Lsat_1_v5_gn_4_162500.1	1.5	NA	NA
Lsat_1_v5_gn_4_162700.1	2.5	NA	2
Lsat_1_v5_gn_4_162801.1	2	NA	2
Lsat_1_v5_gn_4_162881.1	2	NA	2
Lsat_1_v5_gn_4_167121.1	3	4	NA
Lsat_1_v5_gn_4_169500.1	NA	NA	2
Lsat_1_v5_gn_4_46521.1	NA	4	NA
Lsat_1_v5_gn_4_57101.1	NA	NA	2
Lsat_1_v5_gn_4_75020.1	NA	NA	2
Lsat_1_v5_gn_4_76961.1	NA	4	2
Lsat_1_v5_gn_5_130440.1	NA	NA	2
Lsat_1_v5_gn_5_159001.1	2.5	NA	2
Lsat_1_v5_gn_5_168160.1	NA	NA	2
Lsat_1_v5_gn_5_174801.1	NA	NA	2
Lsat_1_v5_gn_5_187781.1	NA	NA	2
Lsat_1_v5_gn_5_188240.1	3	NA	NA
Lsat_1_v5_gn_5_28800.1	NA	NA	2
Lsat_1_v5_gn_5_32061.1	3	NA	NA
Lsat_1_v5_gn_5_32641.1	3	3	NA
Lsat_1_v5_gn_5_32681.1	NA	3	NA
Lsat_1_v5_gn_5_33341.1	NA	4	NA
Lsat_1_v5_gn_5_42521.1	2.5	NA	NA
Lsat_1_v5_gn_5_45581.1	NA	NA	2
Lsat_1_v5_gn_5_45920.1	2	NA	NA
Lsat_1_v5_gn_5_49081.1	1.5	NA	NA
Lsat_1_v5_gn_5_50580.1	2	2	NA
Lsat_1_v5_gn_5_54000.1	3	NA	NA
Lsat_1_v5_gn_5_54140.1	NA	3	NA
Lsat_1_v5_gn_5_54160.1	3	3	NA
Lsat_1_v5_gn_5_54180.1	NA	4	NA
Lsat_1_v5_gn_5_54441.1	NA	4	NA
Lsat_1_v5_gn_5_54481.1	2.5	2	NA
Lsat_1_v5_gn_5_54521.1	3	3	NA
Lsat_1_v5_gn_5_54841.1	3	NA	NA
Lsat_1_v5_gn_5_54880.1	3	2	NA
Lsat_1_v5_gn_5_55040.1	1.5	NA	2
Lsat_1_v5_gn_5_55640.1	2	NA	NA
Lsat_1_v5_gn_5_56320.1	2.5	NA	NA
Lsat_1_v5_gn_5_57060.1	2.5	3	0
Lsat_1_v5_gn_5_57100.1	2.5	2	NA
Lsat_1_v5_gn_5_57381.1	2.5	NA	2
Lsat_1_v5_gn_5_57481.1	3	NA	NA
Lsat_1_v5_gn_5_58101.1	2.5	2	NA
Lsat_1_v5_gn_5_58120.1	3	NA	NA
Lsat_1_v5_gn_5_61540.1	NA	3	NA
Lsat_1_v5_gn_5_61781.1	NA	4	NA
Lsat_1_v5_gn_5_61960.1	NA	4	NA
Lsat_1_v5_gn_5_62981.1	NA	4	NA
Lsat_1_v5_gn_5_69681.1	2.5	NA	NA
Lsat_1_v5_gn_6_17600.1	2.5	NA	NA
Lsat_1_v5_gn_6_19060.1	NA	NA	2
Lsat_1_v5_gn_6_44300.1	NA	NA	2
Lsat_1_v5_gn_6_58800.1	3	NA	NA
Lsat_1_v5_gn_6_66280.1	NA	4	NA
Lsat_1_v5_gn_6_720.1	NA	2	NA
Lsat_1_v5_gn_6_74581.1	3	3	NA
Lsat_1_v5_gn_6_74680.1	3	3	NA
Lsat_1_v5_gn_6_75300.1	3	4	NA
Lsat_1_v5_gn_6_75361.1	3	4	NA
Lsat_1_v5_gn_6_78320.1	3	3	NA
Lsat_1_v5_gn_6_78421.1	1.5	NA	NA
Lsat_1_v5_gn_6_78461.1	2.5	NA	NA
Lsat_1_v5_gn_7_10221.1	2.5	NA	2
Lsat_1_v5_gn_7_11921.1	NA	NA	2
Lsat_1_v5_gn_7_27241.1	NA	NA	2
Lsat_1_v5_gn_7_35221.1	NA	4	NA
Lsat_1_v5_gn_7_74220.1	NA	4	2
Lsat_1_v5_gn_7_83301.1	NA	4	NA
Lsat_1_v5_gn_7_9041.1	NA	NA	2
Lsat_1_v5_gn_8_102380.1	3	NA	2
Lsat_1_v5_gn_8_140221.1	NA	NA	2
Lsat_1_v5_gn_8_146920.1	NA	NA	2
Lsat_1_v5_gn_8_151760.1	NA	NA	2
Lsat_1_v5_gn_8_160220.1	NA	NA	2
Lsat_1_v5_gn_8_164740.1	NA	NA	2
Lsat_1_v5_gn_8_2701.1	3	NA	2
Lsat_1_v5_gn_8_54041.1	NA	4	NA
Lsat_1_v5_gn_8_75581.1	3	NA	NA
Lsat_1_v5_gn_8_9940.1	3	NA	NA
Lsat_1_v5_gn_9_11361.1	NA	NA	2
Lsat_1_v5_gn_9_115041.1	NA	NA	2
Lsat_1_v5_gn_9_119700.1	NA	4	NA
Lsat_1_v5_gn_9_120080.1	2.5	3	NA
Lsat_1_v5_gn_9_120201.1	NA	NA	2
Lsat_1_v5_gn_9_120221.1	3	NA	NA
Lsat_1_v5_gn_9_120281.1	NA	4	NA
Lsat_1_v5_gn_9_122720.1	1.5	NA	NA
Lsat_1_v5_gn_9_1760.1	NA	NA	2
Lsat_1_v5_gn_9_24741.1	2.5	NA	NA
Lsat_1_v5_gn_9_40860.1	NA	NA	2
Lsat_1_v5_gn_9_45721.1	NA	NA	2
Lsat_1_v5_gn_9_64940.1	NA	NA	2
Lsat_1_v5_gn_9_74961.1	NA	NA	2