Lsa-MIR395t

Basic info.

• miRNA locus ID
• Lsa-MIR395t

• miRNA locus accession
• precursor000294

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_4  38400914  38401105  -

• Comments
• A member of family MIR395

• Confidence level
• 

Secondary strurture and sequence

         CG   A -   G --   -  CCCG     CAAA GCCCTACATAGGTCCACCACTGAATCAACTTCAAGCAAATACAGATGATGGAAAAGCCAAGTG
       GC  GAA T TGA C  AGT GG    GGACC    G                                                               
       ||  ||| | ||| |  ||| ||    |||||    |                                                                
       GT  TCA T GGG A  CTC AG    GGGGT    T                                                               
AACCACA  --   - C   - AC   A  ----     ---- TGTGAAGTCATCCTTTAGTAATTATTTCGTAGGGTTACATCACAAGCCTCCTAGAGACTCCCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 1
• Chromosome: Lsat_1_v8_lg_4
• Cluster start: 38393360
• Cluster end: 38401105

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]