Lsa-MIR395s

Basic info.

• miRNA locus ID
• Lsa-MIR395s

• miRNA locus accession
• precursor000357

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_4  38393360  38393551  -

• Comments
• A member of family MIR395

• Confidence level
• 

Secondary strurture and sequence

          CTC C  -    -- ATA  - AGTAATTCTGGCACGTTTATTTTCTAAACAAAGCAATCAACTTCAAGCAAATATAGATGTAGGAAAAGCCAA
       CCT   C TC TATA  T   CC A                                                                        
       |||   | || ||||  |   || |                                                                        G
       GTT   C AT GGGA  C   TC A                                                                        
AACCACA   --- -  C    AC ---  A GGGGGTTTGTGAAGTCATCCTTTAGTAATTATTTCGTAGGGTTACATCACAAGCCTCCTAGAGACTCCCTGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 1
• Chromosome: Lsat_1_v8_lg_4
• Cluster start: 38393360
• Cluster end: 38401105

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]